PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G140200.5
Common NameB456_006G140200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 314aa    MW: 34472.3 Da    PI: 9.6416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G140200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.6e-05270293629
                         HHHHHHHHHHHHHHHHHHHCTSCC CS
                 HLH   6 nerErrRRdriNsafeeLrellPk 29 
                         +++Er RR ri +++ +L+el+P+
  Gorai.006G140200.5 270 SIAERVRRTRISERMRKLQELVPN 293
                         689********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.816264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-5267296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.35E-4268297No hitNo description
Gene3DG3DSA:4.10.280.101.1E-4269296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPSSL LAPFSESLDT GLSKGGPHSD RLIYRFMNPS  60
QDKSGTEATV DHANSRQTFP GLPPHYPRQT SSAMDTSYFL LGMDPRCGKP GTSSLLRQSS  120
SPPGLFTNLS VQTGLGSYTN GELSPSSSNR LKNQISFSSR LPSSLGILSQ ISEIGDDAKL  180
GTGYQYGSWN DSANFPENFS GSKTTQDNDP NFFSANQNSD SGSRLHVLSH HLSLPKTSNE  240
TPAMEKFLSF QDSVPCKIRA KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKVWFR  300
LFFFPLSSSR FGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485593.10.0PREDICTED: transcription factor bHLH130-like isoform X2
SwissprotQ66GR34e-78BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0D2Q9U90.0A0A0D2Q9U9_G
STRINGVIT_08s0007g07810.t011e-90(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-63bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]